Проф. др Владимир Брусић

Почасни члан удружења “Српски Кривак”

 

Vladimir_brusic

 

Лични подаци

Име: Владимир Брусић
   
Позиција: Директор Биоинформатике у центру за вакцину против рака, Dana Farber Cancer Institute, HarvardMedicalSchool, Boston, MA, USA
  Професор на Metropolitan College Computer Science, BostonUniversity, BostonMA, USA.

 

Награде/Признања

2007 U Marquis Who’s Who in World, 2007-2008
2006 U Marquis Who’s Who in Science and Engineering, 2006-2007
2005 Doctor honoris causa, (Dr h.c., Honorary Doctorate), SemmelweisUniversity, Budapest, Hungary.

 

Образовање

2001 Master of Business Administration (MBA), Rutgers University, New Jersey, USA.
2001 Doctor of Philosophy (PhD), La TrobeUniversity, Melbourne, Australia. Topic: Knowledge Discovery from Immunological Databases.
1997 Master of Applied Science in Information Technology (MAppSci), Royal Melbourne Institute of Technology, Melbourne, Australia.
1991 Diploma iz Computer Science, La Trobe University, Melbourne, Australia.
1987 Magistar biomedicinskog inženjerstva, Univerzitet u Beogradu, Jugoslavija
1983 Дипломирани машински инжењер, Машински факултет, Универзитета у Београду

 

Професионалне обуке

2010 CITI Collaborative Institutional Training Initiative – Human Research Curriculum Stage 1. Basic Course Passed on May 11, 2010 (Ref # 4404624).
2010 DF/HCC Investigator Good Clinical Practice (GCP) Training curriculum. Effective on Dec 21, 2010. 

 

Радно искуство

Тренутно

2006-данас Директор Bioinformatike, Cancer Vaccine Centre, Dana Farber Cancer Institute, HarvardMedicalSchool, Boston, MA.
2008-данас Професор, MET Computer Science, BostonUniversity, BostonMA.

Раније

2005-2009 Професор биоинформатике и управљање базама података (nivo E), School of Land, Crop and Food Sciences, University of Queensland, Brisbane, Australia
2005-2006 Директор пројекта (хонорарно), Knowledge Discovery Department Institute for Infocomm Research, Singapore.
2003-2007 Ванредни професор, Department of Microbiology, Faculty of Medicine, National University of Singapore, Singapore.
2003-2005 Ванредни професор School of Computer Engineering, Nanyang Technological University, Singapore.
2003-2005 Директор, Knowledge Discovery Department, Institute for Infocomm Research (ranije KRDL, LIT), Singapore.
1998-2005 Директор лабораторије (Discovery Systems Laboratory), Institute for Infocomm Research (former KRDL, LIT), Singapore.
2002-2005 Ванредни професор Биоинформатике и имунологије, Division of Science and Design, University of Canberra, Canberra, Australia.
1989-1998 Старији програмер/Bioinformatics Officer, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.
1985-1988 Истраживач, Центар за мултидисциплинарне студије, Одељење биомедицинског инжењерства, Универзитет у Београду, Југославија
1986 Истраживач на размени, Rehabilitation Institute of Montreal, Montreal, Canada.
1984-1985 Пројектант, “Сутјеска”, Београд, Југославија.

 

Позиције гостујућег професора

2003 Visiting Professor, Canberra Clinical School, The CanberraHospital and University of Canberra, Canberra, Australia.
2002 Visiting Professor, Canberra Clinical School, The CanberraHospital, Canberra, Australia.
2001 Visiting Research Fellow, Department of Pharmacology, School of Medicine, University of Melbourne, Melbourne, Australia.
2000 Visiting Scientist, The Edward Jenner Institute for Vaccine Research,Compton, Berkshire
1998-2000 Visiting Researcher, Donald Berman Laboratory for Information Technology and Law, Applied Computing Research Institute, La TrobeUniversity, Bundoora, Australia.

 

Каријера професора

2010 Lecturer and subject coordinator. BostonUniversity, MET Computer Science (graduate course CS580 Biomedical Informatics) – 16 students.
2010 Student Supervisor, Special course: Advanced Immunoinformatics. DanishTechnicalUniversity (Institute for Systems Biology).
2009 Lecturer and subject coordinator. BostonUniversity, MET Computer Science (graduate course CS580 Biomedical Informatics) – 16 students.
2008 Lecturer, graduate seminar “Translational Bioinformatics: From Molecules to Vaccines” Graduate Program in Bioinformatics, BostonUniversity. Sep 15, 2008.
2008 Guest Lecturer, undergraduate seminar “Development of Vaccines and Immunotherapeutics” taught as a joint course between BrownUniversity and University of Rhode Island (Bio 160/ BIOL1600, URI/MTC 594). Feb 6, 2008.
2008 Guest Lecturer, graduate seminar “Bioinformatics Applications for Analysis of Viruses and Cancer Antigens”, University of Rhode Island, IDeA Network of Biomedical Research Excellence, Seminar Series: Fall 2007 – Spring 2008. Feb 5, 2008.
2007 Co-Director, First Immunomics Summer School (Computer Modelling, from Molecules to Clinics) Catania, 24 August – 03 September, 2007, 40 students.
2007 Guest Lecturer, BrownUniversity, ProvidenceRI, USA (Bio 160, Development of Vaccines) – 20 students.
2006 Lecturer and subject coordinator. Nanyang Technological University, Singapore (BI6129 Special Topics graduate module – Bioinformatics Discovery) – 20 students.
2005 Lecturer and subject coordinator. Nanyang Technological University, Singapore (BI6129 Special Topics graduate module – Bioinformatics Discovery) – 20 students.
2005 One-day Course on “Bioinformatics and Autoimmunity” May 6, 2005 – Potenza, Italy, Organizers: Vladimir Brusic, Marcella Attimonelli and Paolo Riccio, 50 attendees.
2004 Invited lecturer (Databases and Warehouses for Bioinformatics) New Zealand Summer School of Bioinformatics, Knowledge Engineering and Discovery Research institute, Auckland, New Zealand, February 2004.
2004 Lecturer and subject coordinator. Nanyang Technological University, Singapore (BI6129 Special Topics graduate module – Bioinformatics Discovery) – 20 students.
2004 Lecturer. NationalUniversity of Singapore – Essential Bioinformatics and Biocomputing module (LSM2104 undergraduate module) – 290 students.
2003 Invited tutorial. Biological Data Warehousing. Knowledge Discovery and Data Mining in Biological Databases. The Tenth International Conference on Intelligent Systems for Molecular Biology (ISMB-2003) BrisbaneAustralia June 29-July 3, 2003.
2003 Lecturer and Curriculum co-Developer. NationalUniversity of Singapore – Essential Bioinformatics and Biocomputing module (LSM2104 undergraduate module) – 300 students.
2002 Guest Lecturer and Curriculum co-Developer. NationalUniversity of Singapore – Essential Bioinformatics and Biocomputing module (LSM2104) – 300 students.
2002 International faculty – invited tutorial. Immunoinformatics (Computational Immunology). FIMSA Advanced teaching course on “Molecular Mechanisms of Infection and Immunity”, Ayutthaya, Thailand Oct 21-25, 2002.
2002 Invited tutorial. Bioinformatics – The Machine Learning Approach. International Conference on Bioinformatics (InCoB 2002) (pre-conference workshop), Bangkok, Thailand Feb 5-8 2002.
2001 Invited tutorial. Immunoinformatics (pre-conference workshop). 31st Annual Scientific Meeting, Australasian Society of Immunology, Canberra, Australia, Dec 2-6, 2001.
2001 Invited tutorial. Artificial Intelligence in Bioinformatics. Department of Biochemistry, NationalUniversity of Singapore. May 18, 2001.
2001 Invited tutorial. Artificial Intelligence in Bioinformatics. Department of Biological Sciences, NationalUniversity of Singapore. May 17, 2001.
1998 Invited tutorial. Knowledge Discovery and Data Mining in Biological Databases. The Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB-98) Montreal, Canada, June 28 – July 1 1998.
  •  

Чланства у професионалним телима, комитетима и управним одборима

Тренутно

2010 ImmunologyFrontierResearchCenter (iFReC), OsakaUniversity, OsakaJapan.
2008 President, International Immunomics Society.
2007 Member, International Association for Pattern Recognition, Technical Committee 20 on Pattern Recognition for Bioinformatics
2004 International Scientific Advisory Board Member, Knowledge Engineering and Discovery Research Institute (KEDRI), Auckland University of Technology, Auckland, New Zealand
2003 Fellow, Australian Venom Research Unit, School of Pharmacology, University of Melbourne, Melbourne, Australia


Р
аније

2006-2009 Scientific Coordinator, ImmunoGrid, The European Virtual Human Immune System Project.
2005-2010 Board Member, Asia Pacific Bioinformatics Network (APBioNet)
2003-2007 Vice President of the International Immunomics Society
2006-2007 Advisory Board Member, EuroPhysiome, A Roadmap to the Virtual Physiological Human
2002-2006 International Observer to the Steering Committee, Network on Myelin Structure and its Role in Autoimmunity (MARIE), European Science Foundation.
2005-2006 Associate Member, AustralianResearchCouncilCenter in Bioinformatics, Australia
2003-2006 Board Member, Association of Asian Societies of Bioinformatics
2004-2005 Vice president, Association for Medical and Bio Informatics, Singapore
2004-2005 Technical Advisor for the Engineering Science in Medicine (ESiM) Techscan Panel, Singapore (advising Ministry of Trade and Industry)
2003-2004 Honorary Secretary, Association for Medical and Bio Informatics, Singapore

 

Награде, пројекти и школарине

2010-2011 Human KIR variation profiling by microarray USD 175,000 (PI Vladimir Brusic), Pilot project under 1U01AI090043-01.
2010-2015 NIH Research Grant 1U01AI090043-01 Crossprotective CTL against Influenza (Total of 6,500,000 – PI Ellis Reinherz)
2006-2009 Core funding grant (Cancer Vaccine Center, Dana-Farber Cancer Institute) USD 400,000 per annum for the Bioinformatics Core.
2008 ASBMT (American Society for Blood and Marrow Transplantation) Best Abstract Award for Basic Science. 2008 BMT Tandem Meetings, February 13-17, 2008, San Diego, California, USA. (Ofran Y, Brusic V, Soiffer RJ, Antin JH, J. Ritz J. (2008). Identification of human minor histocompatibilty antigens (mHA) by combining bioinformatic prediction of peptide epitopes with validation of T cell reactivity in patient blood samples after allogeneic hematopoietic stem cell transplantation. Biology of Blood and Marrow Transplantation 2008, 14(2), Supplement 1, 1.)
2006-2008 IST-04-028069-STP. Commission of the European Communities, Information Society Technologies, Specific Targeted Research Project, ImmunoGrid – The European Virtual Human Immune System Project, Project Number: 028069, € 203,244.00 (of the total € 1,951,042). V. Brusic is the proposer and scientific coordinator of the project.
2006 Support for MARIE Autoimmunity Course Budapest 11-Oct-2006. European Science Foundation (€ 8977).
2004-2008 Contract Award No. HHSN266200400085C (NO1-AI40085) – Large Scale Antibody and T-Cell Epitope Discovery Program (under RFP-NIH-NIAID-DAIT-04-39). The contract is valued at USD 509,609 (of total USD 7,279,857, project director Tom August of JohnsHopkinsUniversity).
2004 Core funding grant (Institute for Infocomm Research) S$2,000,000 (US$1,170,000) for the Knowledge Discovery Department (one year).
2003-2004 Academic Research Fund, NationalUniversity of Singapore. R-154-000-190-112, Mapping alternate splice variants onto protein structure using biocomputing methods (one year). Co-investigator with PI Shoba Ranganathan. Total amount S$70,780 (US$41,600).
2003 NIH research grant 1 U19 AI56541-01, a multi-project grant. Project 1, Computational identification of dengue virus T-cell epitopes. – Project leader for Project 1, US$290,000 (five years). (Overall project principal investigator Tom August, JohnsHopkinsMedicalSchool)
2003 Analysis of SARS Coronavirus (CoV) Infection in Singapore Population Cohorts: Asymptomatic SARS CoV Infection, Immunological Relationship with nonSARS CoV and the SARS CoV Serotype (BMRC grant 3/1/55/20/282), S$ 40,000 (US$ 23,500) for computational analysis of SARS CoV (one year). With Johns Hopkins Singapore-PI Tom August, total award amount S$173,967 (US$100,000)
2003 Core funding grant (Institute for Infocomm Research) S$1,700,000 (US$1,000,000) for the Knowledge Discovery Department (one year).
2003 Best paper award (first quarter). Institute for Infocomm Research, Singapore.
2002 Core funding grant (Laboratories for Information Technology) S$700,000 (US$411,800) for the Discovery Systems Laboratory (one year).
2002 Best paper award (second quarter). Laboratories for Information Technology, Singapore.
1999 S$727,750 (US$428,000) research and development grant from the National Science and Technology Board of Singapore for the project Computational Immunology (three years).
1998-1999 Co-investigator on the United States Public Health Service Grant (R01 AI36478). “T Cell Immunity to Preerythrocytic P. falciparum” (investigates targets of immune responses in malaria infection). Principal investigator Prof. James W. Kazura, CaseWestern ReserveUniversity, Cleveland, OH, USA.
1986 Graduate research exchange program scholarship (one year), University of Montreal, Canada.
1982 Undergraduate research exchange program scholarship (eight months), M.E.M. Institute for Biomechanics, University of Bern, Switzerland.

 

Производи и решења

14 CandiVF – a database of Candida albicans virulence factors
13 ANTIMIC – a database of antimicrobial peptides
12 MHCPEP – a database of MHC binding peptides.
11 FIMM – a database of functional immunology.
10 SCORPION – a database of scorpion toxins
9 MOLLUSK – a database of conotoxins
8 ALLERDB – allergen database CysView: Protein classification based on cysteine pairing patterns
7 PREDICT/PredModel – system for prediction of peptide binding to MHC molecules.
6 MULTIPRED – system and method for systematic prediction of peptide ligands to the families of related receptors.
5 PREDBalb/c – prediction of peptide binding to H2d heplotype
4 PREDNOD – prediction of peptide binding to H2Ag7 hplotype
3 PREDTAP – prediction of peptide binding to human Transporter Associated with Antigen Procesing
2 Hotspot Hunter – identification of T cell epitope hot spots in protein antigens
1 BioWare – system for rapid building of specialist biological databases using templates

 

Истраживачка интересовања

1 Data warehousing in biology
2 Knowledge discovery and data mining from biological databases
3 Computational simulation of laboratory experiments
4 Functional genomics
5 Immunomics
6 Computational immunology
7 Vaccine research
8 Modelling receptor-ligand interactions
9 Allergenic safety of proteins
10 Venominformatics

 

Патенти

1 Brusic V., Koh J.L.Y., and Schönbach C. A System, method and interface for building biological databases using templates. (GB2383452, March 30, 2005 SG95799, Jul 27, 2005).
2 Brusic V. Predicting interaction of ligands and receptors e.g. T-cell receptors by representing ligand-receptor interaction by combining representations of ligand interaction sites and representations of receptor interaction sites. (SG 98973 Sep 30, 2005 AU2001245011, Nov 30, 2007)

 

Заједничка истраживања

2006 Present European ImmunoGrid Consortium: Elda Rossi – coordinator (CINECA, Italy), Massimo Bernaschi (CNR, Italy), Santo Motta (U. Catania, Italy), Pier-Luigi Lollini (U. Bologna, Italy), Soren Brunak (DTU, Denmark), Marie-Paule Lefranc (U. Montpellier II, France), David Moss (Birkbeck College, UK), Vladimir Brusic – scientific coordinator (U. Queensland, Australia)
2003 PresentJohnsHopkinsUniversity, Baltimore, MD (Tom August). Viral vaccines.
2002-2005 Riken Institute, Yokohama, Japan (Christian Schoenbach). FANTOM2 functional annotation of mouse genome.
2001-2004 National Health Sciences Centre, Canberra, Australia and CanberraUniversity (Nikolai Petrovsky). Predictive bioinformatics.
2001-2004 Department of Pharmacology, School of Medicine, University of Melbourne, Melbourne, Australia. (Ken Winkel and Jim Angus). Development of the database of conotoxins.
2000-2001 National University Hospital, Singapore (Lim Seng Gee). Data warehousing for the analysis of the DNA and protein sequence variation in Hep-B infected patients.
2000-2004 Edward Jenner Institute for Vaccine Research (Darren Flower). Development of the predictive models for identification of T-cell epitopes using small numbers of experimental data.
1999-2003 WayneStateUniversity (Yi-Chi Kong) and Mayo Clinic (Daniel McCormick). Identification of CLASS II T-cell epitopes in autoimmune thyroiditis.
1999-2000 Institute of Molecular Agrobiology, Singapore (Jimmy Kwang). Development of animal vaccines.
1998-2002 Hoffmann-La Roche Inc. (Juergen Hammer, NutleyNJ). Development of computer models of peptide binding.
1998-2002 PittsburghUniversity, Department of Surgery (Walter Storkus). Identification of HLA-class II T-cell epitopes in melanoma.
1997 PresentCaseWestern ReserveUniversitySchool of Medicine, Division of Geographic Medicine (James Kazura). Identification of T-cell epitopes from P. falciparum antigens.
1997-1998 StanfordUniversity, Stanford Medical Informatics (Russ Altman). Development of knowledge base for MHC-binding peptides.
1996-1997 National Institute of Tumors, Milano, Italy (Venkatesh Ramakrishna and Giorgio Parmiani). Identification of candidate T-cell epitopes from ovarian cancer antigens.

Предавач по позиву

37 IAVI (International Aids Vaccine Initiative), New York City, NY (Jan 20, 2010). “Computational Simulations of the Immune System: Applications for Vaccine Development”
36 Boston College, MA, USA (Oct 23, 2007). “Immunoinformatics – from molecules to vaccines”
35 HarvardUniversity, School of Public Health, BostonMA, USA (Apr 4, 2007). “Immunoinformatics – from sequences to vaccines”
34 BostonUniversity, BostonMA, USA (Nov 9, 2006). “Immunomics: From Peptides to Therapeutics”
33 University of Catania, Catania, Italy (June 22, 2006). “Computational Models for Molecular Medicine”
32 University of Catania, Catania, Italy (June 15, 2006). “Immunoinformatics and Immunomics: Recent Developments”
31 University of Osaka, Osaka, Japan (June 5, 2006) “Computational Models for Molecular Medicine”.
30 SemmelweisUniversity, Budapest, Hungary (Nov 4, 2005) “Computational models for molecular medicine”.
29 University of Bari, Bari, Italy (May 1, 2005). “Trends in Immunomics”.
28 MahidolUniversity, Bankok, Thailand (Oct 20, 2004). “Identification of T-cell epitope hot spots in viral antigens”.
27 BostonUniversity, Boston, USA (July 22, 2004) “Immunoinformatics for the study of immune function”.
26 Johns Hopkins School of Medicine, Baltimore, USA (July 20, 2004) “Immunoinformatics for the study of immune function”.
25 La Jolla Institute for Allergy and Immunology, San Diego, USA (July 16, 2004) “IMMUNOINFORMATICS for the study of immune function”.
24 Institute for Biological Sciences, NRC, Ottawa, Canada, (Nov 19, 2003). “Venominformatics: Prediction of scorpion toxin functional properties from primary sequence”.
23 The CanberraHospital, Canberra, Australia (July-2003). “Medical research using the Internet: bioinformatics and what it can do for you”.
22 Department of Microbiology, NationalUniversity of Singapore (9-Apr-2003). “Bioinformatics for the study of immune system”.  
21 RIKEN Institute, Yokohama, Japan (Mar-2003). “Bioinformatics for study of Allergens”.
20 RIKEN Institute, Yokohama, Japan (Mar-2003). “Immunoinformatics”.
19 Center for Structural Biology, VanderbiltUniversity, Nashville, Tennessee, USA (May-2002). “Prediction of Peptide Binding to Families of Related Receptors”
18 National Library of Singapore (Life Sciences at the Courtyard), Singapore (Aug 2001) “Artificial Intelligence in Biology”
17 Department of Biological Sciences, NationalUniversity of Singapore (May 2001). “Artificial Intelligence in Bioinformatics”.
16 Deparment of Pharmacology, University of Melbourne, Australia. (Mar-2001). “Managing Scorpion Toxin Data”
15 Division of Viral Immunology, Center for AIDS Research, KumamotoUniversity, Honjo, Japan. (Dec-2000).
14 Department of Statistics and Applied Probability, NationalUniversity of Singapore. (Nov-2000).
13 Edward Jenner Institute for Vaccine Research, Compton, Berkshire, UK. (Mar-2000).
12 Children’s HospitalMedicalCenter, Cincinnati, USA. (July-1999).
11 Argonex, Charlottesville, Virginia, USA. (July-1999).
10 ComplexCarbohydrateResearchCenter, University of Georgia, Athens, Georgia, USA. (Jun-1998).
9 Ludwig Institute for Cancer Research (Austin and RepatriationMedicalCenter). Melbourne, Australia. (Apr-1998).
8 Bioinformatics Centre, NationalUniversity of Singapore (2-Dec-1997). “Computational Immunology: From Genes To Vaccines”.
7 National Institute of Tumors, Milan, Italy. (Jun-1997).
6 Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard-Karls-University Tübingen, Germany. (Jun-1997).
5 Department of Medicinal Chemistry, Faculty of Pharmacy, University of Utrecht, Utrecht, The Netherlands. (Jun-1997).
4 Center for Biological Sequence Analysis, The Technical University of Denmark, Lyngby, Denmark. (Jun-1997).
3 The Institute for Medical Research, University of Belgrade, Yugoslavia. (Jun-1997).
2 Department of Biophysics, University of Kyoto, Japan. (May-1997)
1 The Institute of Medical Science, University of Tokyo, Japan. (May-1997)

 

Интервјуи и други чланци осим научних

2004 Published interview: Dubravka Maric. Informatics in service of immunology (in Serbian). SciTech 7:32-34.
2003 Published interview: Tan L.L. (2003). Bioinformatics speeds up the search for cures. Innovation (Singapore) 3(4):42-43.
2001 TV interview on Biotechnology, Channel NewsAsia, Singapore.
2000 Published interview: Hagmann M. (2000). Computers Aid Vaccine Design. Science 6 Oct 2000: 290(5489):80-82.
1998 Published interview: Thwaites T. (1998). AustralAsian: Lure of the orient. New Scientist. 27 June 1998.
1997 Published interview: Thwaites T. (1997). The matchmaker. New Scientist 156(2104):36-40.
1996 Published interview: Featherstone C. (1996). MHC-binding prediction prediction on the Web. Molecular Medicine Today 2(12):491.



Научни часописи
 

Editor: 
Immunomics Reviews (Springer)
  
Deputy editor: 
Immunome Research
 
Member of the editorial board: 
Briefings in Bioinformatics
Computational Biology and Chemistry: Advances and Applications
 
Member of the editorial advisory board: 
The Open Proteomics Journal
 
Ad-hoc or regular reviewer: 
Acta Biotheoretica
BioTechniques
BMC Bioinformatics
BMC Genomics
BMC Structural Biology
Briefings in Bioinformatics
Bioinformatics
Bulletin of Mathematical Biology
Cancer Research
Current Pharmacogenomics
Genomics
Graft
Expert Review of Vaccines
Drug Discovery Today
Immunogenomics
Immunome Research
In Silico Biology
International Immunology
Journal of Applied Bioinformatics
Journal of Biomedicine and Biotechnology
Journal of Bioinformatics and Computational Biology
Journal of Computational Chemistry
Journal of Immunology
Journal of Molecular Biology
Journal of Proteome Research
Letters in Peptide Science
Parasite Immunology
Pattern Recognition Letters
Plant Science
PLoS Biology
PLoS Computational Biology
PLoS Genetics
PLoS Medicine
PLoS Neglected Tropical Diseases
PLoS ONE Proteins: Structure, Function, and Bioinformatics
Protein Science
Nature Biotechnology
Nucleic Acids Research
Pharmacogenomics
Trends in Immunology
Trends in Microbiology
Tuberculosis
Vaccine
Virus Research

 

 Спољашње награде

2010 National Institutes of Health
2010 European Commission
2010  Qatar National Research Foundation
2010 Israel Science Foundation 
2009 National Institutes of Health
2009 Qatar National Research Foundation
2008 US-Israel Binational Science Foundation
2007 Qatar National Research Foundation
2007 Broad Medical Research Program, the Broad Foundation
2005 Medical Research Council UK
2005 The Istituto Nazionale di Alta Matematica (INdAM), Italy
2005 The Netherlands Organisation for Health Research and Development (ZonMw) / Netherlands Genomics Initiative (NGI)
2003 Private Practice Fund, The CanberraHospital, Australia
2003 Canadian Institutes of Health Research
2001 National Medical Research Council, Singapore

 

Публикације

Maj 2010: 119 journal articles, 9 book chapters, 3 edited books, 27 refereed conference articles, and 22 other publications.

 

Научни радови

119 Zhang GL, DeLuca DS, Keskin DB, Chitkushev L, Zlateva T, Lund O, Ellis L. Reinherz EL, Brusic V. MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles. Journal of Immunological Methods (in press).
118 You L., Brusic V., Gallagher M., Boden M. (2010). Using Gaussian process with test rejection to detect T-cell epitopes in pathogen genomes. IEEE Transactions on Computational Biology and Bioinformatics 7(4):741-51.
117 Riemer AB, Keskin DB, Zhang G, Handley M, Anderson KS, Brusic V, Reinhold B, Reinherz EL. A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers (2010). Journal of Biological Chemistry 285(38):29608-22.
116 Zhang W, Choi J, Zeng W, Rogers SA, Alyea EP, Rheinwald JG, Canning CM, Brusic V, Sasada T, Reinherz EL, Ritz J, Soiffer RJ, Wu CJ. Graft-versus-Leukemia Antigen CML66 Elicits Coordinated B-Cell and T-Cell Immunity after Donor Lymphocyte Infusion. Clinical Cancer Research 16(10):2729-39..
115 Halling-Brown M, Pappalardo F, Rapin N, Zhang P, Alemani D, Emerson A, Castiglione F, Duroux P, Pennisi M, Miotto O, Churchill D, Rossi E, Moss DS, Sansom CE, Bernaschi M, Lefranc MP, Brunak S, Lund O, Motta S, Lollini PL, Murgo A, Palladini A, Basford KE, Brusic V, Shepherd AJ. (2010). ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale. Philos Transact A Math Phys Eng Sci. 368(1920):2799-815.
114 Ofran Y, Kim H, Brusic V, Blake L, Mandrell M, Wu C, Sarantopoulos S, Bellucci R, Keskin D, Soiffer R, Antin A, Ritz J. (2010). Diverse patterns of T cell response against multiple newly identified human Y chromosome encoded minor histocompatibility epitopes. Clinical Cancer Research 16(5):1642-51.
113 Miotto O, Heiny AT, Albrecht R, García-Sastre A, Tan TW, J August JT, Brusic V. (2010). Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains. PLoS ONE 5(2):e9025.
112 Marina O, Hainz U, Biernacki MA, Zhang W, Cai A, Duke-Cohan JS, Liu F, Brusic V, Neuberg D, Kutok JL, Alyea EP, Canning CM, Soiffer RJ, Ritz J, Wu CJ. (2010). Serologic markers of effective tumor immunity against chronic lymphocytic leukemia include nonmutated B-cell antigens. Cancer Research 70(3):906-15.
111 Biernacki MA, Marina O, Zhang W, Liu F, Bruns I, Cai A, Neuberg D, Canning CM, Alyea EP, Soiffer RJ, Brusic V, Ritz J, Wu CJ. (2010). Efficacious Immune Therapy in Chronic Myelogenous Leukemia (CML) Recognizes Antigens That Are Expressed on CML Progenitor cells. Cancer Research 70(3):906-15.
110 Halling-Brown M, Shaban R, Frampton D, Sansom CE, Davies M, Flower D, Duffield M, Titball RW, Brusic V, Moss DS. (2009) Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design. Molecular Immunology 6(13):2699-705.
109 Koo Q, Khan AM, Jung KO, Ramdas S, Miotto O, Tan TW, Brusic V, Salmon J, August JT. (2009). Conservation and variability of West Nile virus proteins. PLoS ONE 4(4):e5352
108 Pappalardo F, Halling-Brown MD, Rapin N, Zhang P, Alemani D, Emerson A, Paci P, Duroux P, Pennisi M, Palladini A, Miotto O, Churchill D, Rossi E, Shepherd AJ, Moss DS, Castiglione F, Bernaschi M, Lefranc MP, Brunak S, Motta S, Lollini PL, Basford KE, Brusic V. ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design, and optimization. Briefings in Bioinformatics 10(3):330-40.
107 Cao X., Maloney K.B., Brusic V. (2008). Data mining of cancer vaccine trials: a bird’s-eye view. Immunome Research 4(1):7
106 Lin H.H., Zhang G.L., Tongchusak S., Reinherz E.L., Brusic V. (2008). Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinformatics 9(Suppl 12), S22.
105 Pappalardo F., Zhang P., Halling-Brown M., Basford K.E., Scalia A., Shepherd A.J., Moss D.S., Motta S., Brusic V. (2008). Computational simulations of the immune system for personalized medicine: state of the art and challenges. Current Pharmacogenomics and Personalized Medicine 6(4), 260-271.
104 Khan A.M., Miotto O., Nascimento E.J.M., Srinivasan K.N., Heiny A.T., Zhang G.L., Salmon J., Marques E.T., Tan T.W., Brusic V., August J.T. (2008). Identification and characterization of conserved sequences of dengue virus proteins: implications for vaccine design. PLoS Neglected Tropical Diseases 2(8):e272.
103 Brusic V., Ranganathan S. (2008). Critical technologies for bioinformatics. Briefings in Bioinformatics 9(4), 261-2.
102 Brown N.K., McCormick D.J., Brusic V., David C.S., Kong Y.C. (2008). A Novel H2A-E+ transgenic model susceptible to human but not mouse thyroglobulin-induced autoimmune thyroiditis: identification of mouse pathogenic epitopes Cellular Immunology 51(1), 1-7.
101 Tongchusak S., Brusic V., Chaiyaroj S.C. (2008). Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl proteinase family of proteins. Infection, Genetics and Evolution 8, 467-473. 
100 Lin H.H., Ray S., Tongchusak S., Reinherz E.L., Brusic V. (2008). Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunology 9, 8.
99 Marina O., Biernacki M., Brusic V., Wu C.J. (2008). A concentration-dependent analysis method for high density protein microarrays. Journal of Proteome Research 7(5), 2059-68.
98 Tongchusak S., Leelayuwat C., Brusic V., Chaiyaroj S.C. (2008). In silico prediction and immunological validation of common HLA-DRB1-restricted T cell epitopes of Candida albicans secretory aspartyl proteinase 2. Microbiology and Immunology 52(4), 231-42.
97 Sun Z.J., Oh K.J., Kim M., Yu J., Brusic V., Song L., Qiao Z., Wang J.H., Wagner G., Reinherz E.L. (2008). HIV-1 broadly neutralizing antibody extracts its epitope from a kinked MPER segment on the viral membrane. Immunity 28, 1-12.
96 Miotto O., Heiny A.T., Tan T.W., August J.T., Brusic V.(2008).Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics 9 (Suppl. 1), S18.
95 Miotto O., Tan T.W., Brusic V. (2008). Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. BMC Bioinformatics 9 (Suppl. 1), S7.
94 Zhang G.L., Khan A.M., Srinivasan K.N., Heiny A.T., Lee K.X., Kwoh C.K., August J.T., Brusic V. (2008). Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinformatics 9 (Suppl. 1), S19.
93 Rajapakse M., Schmidt B., Feng L., Brusic V. (2007). Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. BMC Bioinformatics 8(1), 459.
92 Heiny A.T., Miotto O., Srinivasan K.N., Khan A.M., Zhang G.L., Brusic V., Tan T.W., August J.T. (2007). Evolutionarily conserved protein sequences of influenza A viruses, avian and human, as vaccine targets. PLoS ONE 2(11):e1190.
91 Tong J.C., Zhang Z.H., August J.T., Brusic V., Tan T.W., Ranganathan S. (2007). In silico characterization of immunogenic epitopes presented by HLA-Cw*0401. Immunome Research, 3(1):7
90 Ostrout N.D., McHugh M.M., Tisch D.J., Moormann A.M., Brusic V., Kazura J.W. (2007). Long-term T cell memory to human leucocyte antigen-A2 supertype epitopes in humans vaccinated against smallpox. Clinical and Experimental Immunology 149(2):265-73.
89 Brusic V. (2007). The growth of bioinformatics (editorial). Briefings in Bioinformatics 8, 69-70.
88 Brusic V., Marina O., Wu C.J., Reinherz E.L. (2007). Proteome informatics for cancer research: From molecules to clinic. Proteomics 16, 976-991.
87 Zhang G.L., Bozic I., Kwoh C.K., August J.T, Brusic V. (2007). Prediction of supertype-specific HLA class I binding peptides using support vector machines. Journal of Immunological Methods 320, 143-154.
86 Falus A., Brusic V. (2006). Highlights of international conference of immunogenomics and immunomics October 8–12, 2006 Budapest, Hungary. Cellular Immunology 244, 65-76.
85 Khan A.M., Miotto O., Heiny A.T., Salmon J., Srinivasan K.N., Nascimento E., Marques E.T., Brusic V., Tan T.W., August J.T. (2006). A systematic bioinformatics approach for selection of epitope-based vaccine targets. Cellular Immunology 244, 141-147.
84 Zhang Z.H., Tan S.C.C, Koh J.L.Y., Falus A., Brusic V. (2006). ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity. Cellular Immunology 244, 90-96.
83 Khan A.M., Heiny A.T., Lee K.X., Srinivasan K.N., Tan T.W., August J.T., Brusic V. (2006). Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. BMC Bioinformatics 7(suppl 5):S5.
82 Petrovsky N, Brusic V. (2006). Bioinformatics for study of autoimmunity. Autoimmunity 39, 635-643.
81 Rajapakse M., Zhang G.L. Srinivasan K.N.,Schmidt B., Petrovsky N., Brusic V. (2006). PREDNOD, a prediction server for peptide binding to the H-2g7 haplotype of the non-obese diabetic mouse. Autoimmunity 39, 645-650.
80 Brusic V. (2006).Computational models in molecular medicine and bioinformatics – the use and prospects. Magyar Tudomany (Hungarian Science) – an official journal of the HungarianAcademy of Sciences, 872-878.
79 Zhang G.L., Petrovsky N., Kwoh C.K., August J.T., Brusic V. (2006). PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing. Immunome Research 2:3.
78 Tan P.T.J., Ranganathan S., Brusic V. (2006) Deduction of functional peptide motifs in scorpion toxins. Journal of Peptide Science 12(6), 420-427.
77 Tong J.C., Zhang G.L., Tan T.W., August J.T., Brusic V., Ranganathan S. (2006). Prediction of HLA-DQ3.2 ligands: evidence of multiple registers in class II binding peptides. Bioinformatics 22(10), 1232-1238.
76 Gupta V., Tabiin T.M., Sun K., Chandrasekaran A., Anwar A., Yang K., Chikhlikar P., Salmon J., Brusic V., Marques E.T., Kellathur S.N., August T.J. (2006). SARS coronavirus nucleocapsid immunodominant T-cell epitope cluster is common to both exogenous recombinant and endogenous DNA-encoded immunogens. Virology 347(1), 127-139.
75 Tan P.T.J., Veeramani A., Srinivasan K.N., Ranganathan S., Brusic V. (2006). Scorpion 2: a database for structure-function analysis of scorpion toxins. Toxicon 47(3), 356-363.
74 Brusic V. Information management for the study of allergies. (2006). Inflammation & Allergy – Drug Targets 5(1), 35-42.
73 Tongchusak S., ChaiyarojS.C., Veeramani A., Koh J.L.Y., Brusic V. (2005). CandiVF – Candida albicans virulence factor database. International Journal of Peptide Research and Therapeutics 11(4), 271-277.
72 Zhang G., Khan A.M., Srinivasan K.N., August T.J., Brusic V. (2005). Neural models for predicting viral vaccine targets. Journal of Bioinformatics and Computational Biology 3, 1207-1225.
71 Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R.R., Zavolan M., Davis M.J., Wilming L.G., Aidinis V., J. Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom E., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T. R., Gojobori T., Green R. E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P.T., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schönbach C., Sekiguchi K., Semple C.A.M., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y. (2005). The transcriptional landscape of the mammalian genome. Science 309, 1559-1563.
70 Schönbach C., Koh J.L.Y., Flower D.R., Brusic V. (2005). An update on functional molecular immunology database FIMM. Applied Bioinformatics 4, 25-31.
69 Brusic V., August T.J., Petrovsky N. (2005). Information technologies for vaccine research. Expert Review of Vaccines 4, 407-417.
68 Brusic V., Petrovsky N. (2005). Immunoinformatics and its relevance to understanding human immune disease. Expert Review of Clinical Immunology. 1(1), 145–157.
67 Zhang G.L., Khan A.M., Srinivasan K.N., August J.T., Brusic V. (2005). MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Research 33, W172-179.
66 Zhang G., Srinivasan K.N., Veeramani A., August T.J., Brusic V. (2005) PREDBALB/c: a system for prediction of peptide binding to the H2d molecules, a haplotype of the BALB/c mouse. Nucleic Acids Research 33, W180-183.
65 Tan P.T.J., Srinivasan K.N., Seah S.H., Koh J.L.Y., Tan T.W., Ranganathan S., Brusic V. (2005). Accurate prediction of scorpion toxin functional properties from primary sequences. Journal of Molecular Graphics and Modelling 24, 17-24
64 Mandic M., Castelli F., Janjic B., Almunia C., Andrade P., Gillet D., Brusic V., Kirkwood J.M., Maillere B., Zarour H.M. (2005). One NY-ESO-1-derived epitope that promiscuously binds to multiple HLA-DR and HLA-DP4 molecules and stimulates autologous CD4+ T Cells from patients with NY-ESO-1-expressing melanoma. Journal of Immunology. 174(3), 1751-1759.
63 Srinivasan K.N., Brusic V., August JT (2004). New technologies for vaccine development. Drug Development Research 62, 387-396. 
62 Siew J.P., Khan A.M., Tan P.T., Koh J.L., Seah S.H., Koo C.Y., Chai S.C., Armugam A., Brusic V., Jeyaseelan K. (2004). Systematic analysis of snake neurotoxins functional classification using a data warehousing approach. Bioinformatics 20, 3466-3480.
61 Brusic V., August J.T. (2004). The changing field of vaccine development in the genomics era. Pharmacogenomics 5(6), 597-600.
60 Flynn J.C., McCormick D.J., Brusic V., Wan Q., Panos J.C., Giraldo A.A., David C.S., Kong Y.C. (2004). Pathogenic human thyroglobulin peptides in HLA-DR3 transgenic mouse model of autoimmune thyroiditis. Cellular Immunology 229, 79-85.
59 Brusic V., Bajic V.B., Petrovsky N. (2004). Computational methods for prediction of T-cell epitopes – a framework for modeling, testing, and applications. Methods 34, 436-443.
58 Petrovsky N., Brusic V. (2004). Virtual models of the HLA class I antigen processing pathway. Methods 34, 429-435.
57 Srinivasan K.N., Zhang G., Khan A.M., August T.J., Brusic V. (2004). Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens. Bioinformatics 20 Suppl 1, I297-I302.
56 Brusic V. (2004). Computational models for molecular medicine. Chemical Industry 58 (6a), 79-81.
55 Lenffer J., Lai P., El Mejaber W., Khan A.M., Koh J.L.Y., Tan P.T.J., Seah S.H., Brusic V. (2004). CysView: Protein classification based on cysteine pairing patterns. Nucleic Acids Research 32, W350-355.
54 Silva D.G., Schonbach C., Brusic V., Socha L., Nagashima T., Petrovsky N. Identification of “pathologs” (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system. (2004). BMC Genomics 5, 28.
53 Brusic V., Takagi Y., Nakamura H. (2004). Bioinformatics in Asia (in Japanese). Tanpakushitsu kakusan koso (Protein, nucleic acid, enzyme) 49, 74-83.
52 Brusic V., Flower D.R. (2004). Bioinformatics tools for identifying T-cell epitopes. Drug Discovery Today: Biosilico 2, 18-23.
51 Bramachary M., Krishnan S.P.T., Koh J.L.Y., Seah SH., Tan T.W., Brusic V., Bajic V.B. (2004). ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Research 32, D586-589.
50 Bajic V.B., Brusic V. (2003). Computational detection of vertebrate RNA polymerase II promoters. Methods in Enzymology 370, 237-250.
49 Petrovsky N., Schönbach C., Brusic V. (2003). Bioinformatics strategies for better understanding of immune function. In Silico Biology 3, 0034.
48 Fry B.G., Wüster W., Kini R.M., Brusic V., Khan A., Venkataraman D., Rooney A.P. (2003). Molecular evolution and phylogeny of snake venom three finger toxins. Journal of Molecular Evolution 57, 110-129.
47 Brusic V.,Pillai R.S., Silva D.G., Petrovsky N., RIKEN GER Group Members, SchönbachC. (2003). Cytokine-related genes identified from the RIKEN full-length mouse cDNA dataset. Genome Research 13, 1307-1317. 
46 Brusic V., Petrovsky N. (2003). Bioinformatics for characterisation of allergens, allergenicity and allergic cross-reactivity. Trends in Immunology 24, 225-228. 
45 Brusic V. (2003). From immunoinformatics to immunomics. Journal of Bioinformatics and Computational Biology 1, 179-181.
44 Tan P.T.J, Khan A.M., Brusic V. (2003). Bioinformatics for venom and toxin sciences. Briefings in Bioinformatics 4, 53-62.
43 Brusic V., Millot M., Petrovsky N., Gendel S.M., Gigonzac O., Stelman S.J. (2003). Allergen databases. Allergy 58, 1093-1100.
42 Brusic V., Petrovsky N., Gendel S.M., Millot M., Gigonzac O., Stelman S.J. (2003). Computational tools for the study of allergens. Allergy 58, 1083-1092.
41 Tatsumi T., Kierstead L.S., Ranieri E., Gesualdo L., Schena F.P., Finke J.H., Bukowski R.M., Brusic V., Sidney J., Sette A., Logan T.F., Kasamon Y.L., Slingluff C.L.Jr., Kirkwood J.M., Storkus W.J. (2003). MAGE-6 encodes HLA-DRbeta1*0401-presented epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma. Clinical Cancer Research 9, 947-954.
40 Bajic V.B., Seah S.H., Chong A., Krishnan S.P.T., Koh J.L.Y., Brusic V. (2003). Computer model for recognition of transcription start sites in RNA polimerase II promoters of vertebrates. Journal of Molecular Graphics and Modelling 21, 323-332.
39 Bajic V.B., Tang S., Han H., Brusic V., Hatzigeorgiou A.G. (2002). Artificial neural networks based systems for recognition of genomic signals and regions: a review. Informatica (Slovenia) 26, 389-400.
38 Okazaki Y., Furuno M., Kasukawa T., Adachi J., Bono H., Kondo S., Nikaido I., Osato N., Saito R., Suzuki H., Yamanaka I., Kiyosawa H., Yagi K., Tomaru Y., Hasegawa Y., Nogami A., Schonbach C., Gojobori T., Baldarelli R., Hill D.P., Bult C., Hume D.A., Quackenbush J., Schriml L.M., Kanapin A., Matsuda H., Batalov S., Beisel K.W., Blake J.A., Bradt D., Brusic V., Chothia C., Corbani L.E., Cousins S., Dalla E., Dragani T.A., Fletcher C.F., Forrest A., Frazer K.S., Gaasterland T., Gariboldi M., Gissi C., Godzik A., Gough J., Grimmond S., Gustincich S., Hirokawa N., Jackson I.J., Jarvis E.D., Kanai A., Kawaji H., Kawasawa Y., Kedzierski R.M., King B.L., Konagaya A., Kurochkin I.V., Lee Y., Lenhard B., Lyons P.A., Maglott D.R., Maltais L., Marchionni L., McKenzie L., Miki H., Nagashima T., Numata K., Okido T., Pavan W.J., Pertea G., Pesole G., Petrovsky N., Pillai R., Pontius J.U., Qi D., Ramachandran S., Ravasi T., Reed J.C., Reed D.J., Reid J., Ring B.Z., Ringwald M., Sandelin A., Schneider C., Semple C.A., Setou M., Shimada K., Sultana R., Takenaka Y., Taylor M.S., Teasdale R.D., Tomita M., Verardo R., Wagner L., Wahlestedt C., Wang Y., Watanabe Y., Wells C., Wilming L.G., Wynshaw-Boris A., Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P., Hayatsu N., Hirozane-Kishikawa T., Konno H., Nakamura M., Sakazume N., Sato K., Shiraki T., Waki K., Kawai J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashizume W., Imotani K., Ishii Y., Itoh M., Kagawa I., Miyazaki A., Sakai K., Sasaki D., Shibata K., Shinagawa A., Yasunishi A., Yoshino M., Waterston R., Lander E.S., Rogers J., Birney E., Hayashizaki Y. (2002). Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420, 563-573.
37 Noguchi H., Kato R., Hanai T., Matsubara Y., Honda H., Brusic V., Kobayashi T. (2002). Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules. Journal of Bioscience and Bioengineering 94, 264-270.
36 Petrovsky N., Brusic V. (2002). Computational immunology: The coming of age. Immunology and Cell Biology 80, 248-254.
35 Brusic V., Petrovsky N., Zhang G., Bajic V.B. (2002). Prediction of promiscuous peptides that bind HLA class I molecules. Immunology and Cell Biology 80, 280-285.
34 Schönbach C., Yu K., Brusic V. (2002). Large-scale computational identification of HIV T-cell epitopes. Immunology and Cell Biology 80, 300-306.
33 Yu K., Petrovsky N., Schönbach C., Koh J.L.Y., Brusic V. (2002). Methods for prediction of peptide binding to MHC molecules: a comparative study. Molecular Medicine 8, 137-148.
32 Zarour H.M., Maillere B., Brusic V., Coval K., Williams E., Pouvelle-Moratille S., Castelli F., Land S., Bennouna J., Logan T., Kirkwood J.M. (2002). NY-ESO-1 119-143 is a promiscuous MHC class II T-helper epitope recognized by Th1 and Th2-type tumor-reactive CD4+ T cells. Cancer Research 62, 213-218.
31 Bajic V.B., Chong A., Seah S.H., Brusic V. (2002). Intelligent system for vertebrate promoter recognition. IEEE Intelligent Systems 17, 64-70.
30 Schönbach C., Koh J.L.Y., Flower D.R., Wong L., Brusic V. (2002). FIMM, a database of functional molecular immunology – update 2001. Nucleic Acids Research 30, 226-229.
29 Bajic V.B., Seah S.H., Chong A., Zhang G., Koh J.L.Y., Brusic V. (2002). Dragon Promoter Finder: recognition of            vertebrate RNA Polymerase II promoters. Bioinformatics 18, 198-199.
28 Srinivasan K.N., Gopalakrishnakone P., Tan P.T., Chew K.C., Cheng B., Kini R.M., Koh J.L.Y, Seah S.H., Brusic V. (2002). SCORPION, a molecular database of scorpion toxins. Toxicon 40, 23-31.
27 Petrovsky N., Tam S.K., Brusic V., Russ G., Socha L., Bajic V.B. (2002). Use of artificial neural networks in improving renal transplantation outcomes. Graft 4, 6-13.
26 Kierstad L.S., Ranieri E., Olson W., Brusic V., Singluff C.L.Jr., Kirkwood J.M., Storkus W.J. (2001). GP100/MEL17 and tyrosinase encode multiple epitopes recognized by Th1-type CD4+ T cells. British Journal of Cancer 85, 1735-1745.
25 Yan Y., Panos J.C., McCormick D.J., Wan Q., Giraldo A.A., Brusic V., David C.S., Kong Y.M. (2001). Characterization of a novel H2A-E+ transgenic model susceptible to heterologous but not self tyroglobulin in autoimmune thyroiditis: thyroiditis transfer with V3378+ T cells. Cellular Immunology 212, 63-70.
24 Brusic V., Bucci K., Schönbach C., Petrovsky N., Zeleznikow J., Kazura J.W. (2001). Efficient discovery of immune response targets by cyclical refinement of QSAR models of peptide binding. Journal of Molecular Graphics and Modelling 19, 405-411.
23 Zarour H., Storkus W.J., Brusic V., Williams E., Old L.J., Kirkwood J.M. (2000). NY-ESO-1 encodes DRB1*0401-restricted epitopes recognized by melanoma-reactive CD4+ T cells. Cancer Research 60, 4946-4952.
22 Schönbach C., Kowalski-Saunders P., Brusic V. (2000). Data warehousing in molecular biology. Briefings in Bioinformatics 1, 190-198.
21 Brusic V., Zeleznikow J., Petrovsky N. (2000). Molecular immunology databases and data repositories. Journal of Immunological Methods 238, 17-28.
20 Zarour H.M., Kirkwood J.M., Salvucci-Kierstead L., Herr W., Brusic V., Singluff C.L.Jr, Sette A., Storkus W.J. (2000). Melan-A/MART-151-73 represents an immunogenic HLA-DR4-restricted epitope recognized by melanoma-reactive CD4+ T cells. Proceedings of the National Academy of Sciences USA 97, 400-405.
19 Schönbach C., Koh J.L.Y., Sheng X., Wong L., Brusic V. (2000). FIMM, a database of functional molecular immunology. Nucleic Acids Research 28, 222-224.
18 Brusic V., Zeleznikow J. (1999). Knowledge Discovery and Data Mining in Biological Databases. Knowledge Engineering Review 14, 257-277.
17 Brusic V., Zeleznikow J. (1999). Computational binding assays of antigenic peptides. Letters in Peptide Science 6, 313-324.
16 Brusic V., van Endert P., Zeleznikow J., Daniel S., Hammer J., Petrovsky N. (1999). A neural network model approach to the study of human TAP transporter. In Silico Biology 1, 109-121.
15 Honeyman M.C., Brusic V., Stone N., Harrison L.C. (1998). Neural network-based prediction of candidate T-cell epitopes. Nature Biotechnology 16, 966-969.
14 Daniel S., Brusic V., Caillat-Zucman S., Petrovsky N., Harrison L., Riganelli D., Sinigaglia F., Gallazzi F., Hammer J., van Endert P.M. (1998). Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules. Journal of Immunology 161, 617-624.
13 Brusic V., Rudy G., Harrison L.C. (1998). MHCPEP – a database of MHC-binding peptides: update 1997. Nucleic Acids Research 26, 368-371.
12 Brusic V., Rudy G., Honeyman M.C., Hammer J., Harrison L.C. (1998). Prediction of MHC class-II binding peptides using an evolutionary algorithm and artificial neural network. Bioinformatics 14, 121-130.
11 Honeyman M.C., Brusic V., Harrison L.C. (1997). Strategies for identifying and predicting islet autoantigen T-cell epitopes in insulin-dependent diabetes (IDDM). Annals of Medicine 29, 401-404.
10 Ramakrishna V., Negri D.R.M., Brusic V., Fontanelli R., Canevari S., Bolis G., Castelli C., Parmiani G. (1997). Generation and phenotypic characterisation of new human ovarian cancer lines with the identification of antigens potentially recognizable by HLA-restricted cytotoxic T cells. International Journal of Cancer 73, 143-150.
9 Harrison L.C., Honeyman M.C., Tremblau S., Gregori S., Gallazzi F., Augstein P., Brusic V., Hammer J., Adorini L. (1997). Peptide binding motif for I-Ag7, the class II MHC molecule of NOD and Biozzi AB/H mice. Journal of Experimental Medicine 185, 1013-1021.
8 Brusic V., Rudy G., Kyne A.P., Harrison L.C. (1997). MHCPEP, a database of MHC-binding peptides: update 1996. Nucleic Acids Research 25, 269-271.
7 Nakagawa K., Brusic V., McColl G., Harrison LC. (1997). Evidence for differential expression of endogenous retroviruses in the synovial compartment in rheumatoid arthritis. Arthritis and Rheumatism 40, 627-638.
6 Brusic V., Rudy G., Kyne A.P., Harrison L.C. (1996). MHCPEP – a database of MHC-binding peptides: update 1995. Nucleic Acids Research 24, 242-244.
5 Rudy G., Stone N., Harrison L.C., Colman P.G., McNair P., Brusic V., French M.B., Honeyman M.C., Tait B., Lew A.M. (1995). Similar peptides from two beta cell autoantigens, proinsulin and glutamic acid decarboxylase, stimulate T cells of individuals at risk for insulin-dependent diabetes. Molecular Medicine 1, 625-633.
4 , 1995, http://www.csu.edu.au/ci/vol2/vbb/vbb.html
3 Brusic V., Rudy G., Harrison L.C. (1994). MHCPEP – a database of MHC binding peptides. Nucleic Acids Research 22, 3663-3665.
2 Brusic V., Bozovic Z., Stojiljkovic Z., Djakovic D., Trajkovic M. (1990). Clinical information systems planning in Belgrade health care region. Annual Review in Automatic Programming 14(II), 27-29.
1 Nedeljkovic P., Trajkovic M., Brusic V. (1988). BELGER – a program package for analysis of independence of the aged persons (In Serbian). Tehnika, special issue Informatics and Productivity (Journal of the Yugoslav Society of Engineers and Technicians), pp. 219-224, Belgrade.

 

Књигеипоглавља у књигама

12 Schönbach C., Ranganathan S., Brusic V. (editors). Immunoinformatics. Springer, NY, USA, November 2007. ISBN-10: 0387729674
11 Brusic V., Khan A.M. (editors) (2005). Abstract Book. The 3rd Asia-Pacific Bioinformatics Conference & Singapore Bioinformatics Week. World Scientific, January 2005.
10 Koh J.L.Y., Brusic V. (2005). Bioinformatics Database Warehousing. In Chen YPP (editor), Bioinformatics Technology, pages 45-62, Springer.
9 Akutsu T., Brusic V., Kanehisa M., Miyano S., Takagi T. (editors). Genome Informatics 2004. Genome Informatics Series Vol. 15. No. 2. Universal Academy Press, Inc, Tokyo, Japan 2004.
8 Brusic V., Koh J.L.Y. (2004). Genetic databases. In Ruvinsky A., Graves J. Mammalian Genomics, pages 411-427. CAB International, Wallingford, Oxon, UK.
7 Motta S., Brusic V. (2004). Mathematical Modelling of the Immune System. In G. Ciobanu, G. Rozenberg (eds.) Modelling in Molecular Biology, pages 193-218, Natural Computing Series, Springer, 2004.
6 Brusic V., Petrovsky N. (2003). Immunoinformatics – the new kid in town. In Bock G., Goode J. (eds). In Immunoinformatics: bioinformatics strategies for better understanding of immune function, Novartis Foundation Symposium 254, pp 3-13.
5 Petrovsky N., Silva D., Brusic V. (2003). The future for computational modelling and prediction systems in clinical immunology. In Immunoinformatics: bioinformatics strategies for better understanding of immune function, Novartis Foundation Symposium 254, pp 23-32.
4 Brusic V., Petrovsky N. (2002). Bioinformatic analysis for assessing allergenic safety of proteins. Life Sciences Technology pp. 73-76. WMRC Business Briefings Series. LondonUK.
3 Brusic V., Harrison LC. (1998). Computational methods in prediction of MHC-binding peptides. In Michalewicz M. (ed), Advances in Computational Life Sciences: Humans to Proteins, pp. 213-222, CSIRO Publishing, Melbourne.
2 Brusic V., Rudy G., Harrison L.C. (1994). Prediction of MHC binding peptides using artificial neural networks. In Stonier R.J., Yu X.S. (eds), Complex Systems: Mechanism of Adaptation, pp. 253-260, IOS Press, Amsterdam/OHMSHA Tokyo.
1 Brusic V., Bozovic Z., Stojiljkovic Z., Djakovic D., Trajkovic M. (1990). Clinical information systems planning in Belgrade health care region. Milovanovic R., Elzer P. (eds). Experience with the Management of Software Projects, pp. 27-29, Pergamon, OxfordUK, 1990.

 

Објављени чланци у зборницима

27 Zhang P, Vladimir Brusic V, Basford K. A hybrid model for prediction of peptide binding to MHC molecules (2009). Lecture Notes in Bioinformatics 5506, 529-536.
26 You L, Zhang P, Boden M, Brusic V. (2007). Understanding prediction systems for HLA-binding peptides and T-cell epitope identification. Lecture Notes in Bioinformatics 4774, 337-348.
25 Rajapakse M., Veeramani A., Gopalakrishnan K., Ananthanarayan S., Kn S., August J.T., Khan A.M., Brusic V. Temporal and antigenic analysis of dengue virus serotype 1 genome polyprotein sequences. In: Biomedical and Pharmaceutical Engineering, ICBPE 2006. IEEE CNF (ISBN: 81-904262-1-4), Singapore, 2006, pp. 301-306.
24 Zhang G.L., August J.T., Kwoh C.K., Brusic, V. (2006). Performance Evaluation of MULTIEPD1 on Prediction of MHC Class I Binders. In: Biomedical and Pharmaceutical Engineering. ICBPE 2006. IEEE CNF (ISBN: 81-904262-1-4), Singapore, 2006, pp. 307-313.
23 Zhang G.L., Tong J.C., Zhang Z.H., August J.T., Zheng Y., Kwoh C.K., Brusic V. (2006). Computational Models for Identifying Promiscuous HLA-B7 Binders based on Information Theory and Support Vector Machine. In: Biomedical and Pharmaceutical Engineering,. ICBPE 2006. IEEE CNF (ISBN: 81-904262-1-4), Singapore, 2006, pp. 319-323
22 Veeramani A., Gopalakrishnan K., Brusic V., Koh, J.L.Y. (2006). Biodart – catalogue of biological data artifact examples. In: Biomedical and Pharmaceutical Engineering, ICBPE 2006. IEEE CNF (ISBN: 81-904262-1-4), Singapore, 2006, pp. 324-329
21 Seah S.H., Kwoh C.K., Brusic, V., Sakharkar M.K., Ng G.S. (2006). Functional Prediction of Snake Neurotoxins. 9th International Conference on Control, Automation, Robotics and Vision, 2006. ICARCV ’06, 5-8 Dec., 2006 Singapore. IEEE CNF pp. 1 – 4
20 Lam K.T, Koh J.L.Y., Veeravalli B., Brusic V. (2006). Incremental maintenance of biological databases using association rule mining. Lecture Notes in Bioinformatics 4146, 140-150.
19 Handoko S.D., Kwoh C.K., Ong Y.S., Zhang G.L., Brusic V. (2006). Extreme learning machine for predicting HLA-peptide binding. Lecture Notes in Computer Science 3973, 716-721.
18 Rajapakse M., Schmidt B., Brusic V. (2006). Multi-objective evolutionary algorithm for discovering peptide binding motifs. Lecture Notes in Computer Science 3907, 149-158.
17 Miotto O, Tan TW, Brusic V. (2005). Supporting the curation of biological databases with reusable text mining. The 16th International Conference on Genome Informatics, Yokohama, Japan, December 19-21, 2005. Genome Informatics 16(2), 32-44.
16 Miotto O., Tan T.W., Brusic V. (2005). Extraction by example: induction of structural rules for the analysis of molecular sequence data from heterogeneous sources. Lecture Notes in Computer Science 3578, 398-405.
15 Rajapakse M., Wyse L., Schmidt B., Brusic V. (2005). Deriving matrix of peptide-MHC interactions in diabetic mouse by genetic algorithm. Lecture Notes in Computer Science 3578, 440-447.
14 Bozic I., Zhang G.L., Brusic V. (2005). Predictive vaccinology: optimisation of predictions using support vector machine classifiers. Lecture Notes in Computer Science 3578, 375-381.
13 Koh J.L.Y., Lee M.L., Brusic V. (2005). A classification of biological data artifacts. In Workshop on Database Issues in Biological Databases (DBiBD). January 8-9, 2005. National e-Science Centre, Edinburgh, Scotland, UK in conjunction with ICDT.
12 Koh J.L.Y., Brusic V. (2004). Warehousing of Biological Data. International Workshop on Knowledge Discovery in BioMedicine (KDbM-04). A PRICAI 2004 Workshop, August 2004
11 Koh J.L.Y., Lee M.L., Khan A.M., Tan P.T.J, Brusic V. (2004). Duplicate Detection in Biological Data using Association Rule Mining. 2nd European Workshop on Data Mining and Text Mining for Bioinformatics. An ECML/PKDD 2004 workshop, Pisa, Italy, September 24, 2004.
10 Koh J.L.Y., Krishnan S.P.T., Seah S.H., Tan P.T., Khan A., Lee M.L., Brusic V. (2004).BioWare: A framework for bioinformatics data retrieval, annotation and publishing. Search and Discovery in Bioinformatics. A SIGIR 2004 Workshop, 27th Annual International ACM SIGIR Conference on Research and Development in IR. July 29, 2004, Sheffield, UK.
9 Bajic V., Brusic V., Li J., Ng S.K., Wong L. (2003). From Informatics to Bioinformatics. Proceedings of the 1st Asia Pacific Bioinformatics Conference, APBC 2003, pp. 3-12. Adelaide, Australia, February 2003.
8 Bajic V.B., Tang S, H. Han H., Brusic V. (2002). Recognition of genomic signals and regions by artificial neural networks: an overview. Proceedings of the 5th International Multi-conference Information Society 2002, Ljubljana, Slovenia, 14-18 October, 2002.
7 Brusic V., Zeleznikow J. (1999). Artificial neural network applications in immunology. Proceedings of the 1999 International Joint Conference on Neural Networks IJCNN’99. Manuscript #2034 Session: 10.5A.
6 Brusic V., Zeleznikow J., Sturniolo T., Bono E., Hammer J. (1999). Data cleansing for computer models: a case study from immunology. Proceedings of ICONIP99 Sixth International Conference on Neural Information Processing, IEEE, 603-609.
5 Hon L., Abernethy N.F., Brusic V., Chai J., Altman R. (1998). HCWeb: Converting a WWW database into a knowledge-based collaborative environment. Proceedings of AMIA Symposium, 947-951.
4 Brusic V., Schönbach C., Takiguchi M., Ciesielski V., Harrison L.C. (1997). Application of genetic search in derivation of matrix models of peptide binding to MHC molecules. ISMB 5:75-83.
3 Brusic V., Rudy G., Ellis G. (1994). Using conceptual graphs to model the immune system: specification of MHC/peptide binding prediction. Proceedings of the 1st Australian Conceptual Structures Workshop, pp. 78-91, Armidale.
2 Tomovic R., Bozovic Z., Brusic V., Djakovic D., Srdanovic V., Stojiljkovic Z., Trajkovic M. (1988). Activities of the BelgradeUniversityCenter for multidisciplinary Studies in medical software design during 1985-1987. (In Serbian). Proceedings of the XXII Yugoslav Conference of ETAN, Sarajevo.
1 Brusic V., Drouin G. (1987). Hip and knee moments as control mechanisms for an above-knee prosthetic leg. Proceedings of the 2nd International Symposium Automaton and Robot, pp. 94-104, Belgrade.

 

Остале публикације

22 Sansom CE, Shepherd A, Brusic V, Motta S, Lollini PL , Lefranc MP, Moss DS. (2008). Multi-scale modeling of the immune system: applications to cancer immunotherapy. Anticancer Research 28(5C), 3471-3471. (Meeting Abstract).
21 Ofran Y, Brusic V, Soiffer RJ, Antin JH, J. Ritz J. (2008). Identification of human minor histocompatibilty antigens (mHA) by combining bioinformatic prediction of peptide epitopes with validation of T cell reactivity in patient blood samples after allogeneic hematopoietic stem cell transplantation. Biology of Blood and Marrow Transplantation, 14(2), Supplement 1, 1.
20 Sarantopoulos S, Bhuiya NS, Cutler CS, Wu CJ, Brusic V, Soiffer RJ, Antin JH, Ritz J. (2008). Characterization of B cell target antigens in patients with chronic graft versus host disease. Biology of Blood and Marrow Transplantation, 14(2), Supplement 1, 15. (Abstract from the 2008 BMT Tandem Meetings).
19 Marina O, Biemacki M, Cai A, Zhang WD, Duke-Cohan JS, Brusic V, Liu FL, Alyea E, Canning CM, Seiffer R, Ritz J, Wu CJ. (2007). Immunoproteomic identification of graft-versus-leukemia targets in patients with chronic lymphocytic leukemia. Blood 110(11), 30A. (Meeting Abstract).
18 Marina O, Wu CJ, Brusic V. (2007). Target discovery using proteomic microarrays. BIOforum Europe, 11(10), 20-22.
17 Tongchusak S, Brusic V, Chaiyaroj SC (2006). Immunoinformatics and Immunological Assessment of Fungal Allergens (Symposium 5 APAACI Symposium : Cytokines in Allergy) Japanese Journal of Allergology, 55(3), 336. (Meeting abstract).
16 Basford K, DeLacy I, Brusic V. (2005). Plant breeding informatics. Proceedings of the 10th International Congress of SABRAO “How to Utilize Crop Diversity for Productivity and Sustainability, Breeding Science and Technology for the New Era”, Tsukuba, Japan, Aug. 22-23, 2005. (Invited paper).
15 Brusic V. (2004). Possible role of viral antigen recognition in T-cell repertoire selection processes. Tissue Antigens B(4), 341-341. (Meeting abstract).
14 Zhang G, Khan AM, Srinivasan KN, August JT, Brusic V. (2003). Neural Models for Predicting Viral Vaccine Targets. Proceedings of the NCEI’03: Neurocomputing and Evolving Intelligence 2003, Auckland, New Zealand, November 20-21, 2003.
13 Silva DG, Schonbach C, Brusic V, Socha LA, Nagashima T, Petrovsky N. (2003). Identification of novel “pathologs” (human disease-related gene candidates) from the RIKEN full-length mouse cDNA data set. Genome Research 13(6B), 1559-1559. (Abstract).
12 Silva D.G., Schönbach C., Brusic V., Socha L.A., Nagashima T., RIKEN GER Group Members, Petrovsky N. (2003). Identification of novel “pathologs” (human disease-related gene candidates) from the RIKEN full-length mouse cDNA dataset. Genome Research, 13, 1559.
11 Ranieri E., Tatsumi T., Kierstead L.S., Finke J.H., Bukowski R.M., Brusic V., Sidney J., Sette A., Di Natale C., Cellie M., Kwok W., Grandaliano G., Schena F.P., Gesualdo L., Storkus W.J. (2002). Identification of HLA-DRB1*0401+-restricted MAGE-6 derived epitopes recognized by Th1/Th2 CD4+T-helper cells in renal cell carcinoma (RCC) patients (PTS). Journal of the American Society of Nephrology. 13, 505A-505A Suppl. S 2002.
10 Hanai T., Noguchi H., Matsubara Y., Takeda K., Honda H., Brusic V., Kobayashi T. (2000). Computational design of proteinous drug employing hidden Markov model. Genome Informatics 11, 394-395.
9 Petrovsky N., Brusic V. (2000). Bioinformatics in life sciences research. Today’s Life Sciences (Australia), November/December 2000, 26-28 .
8 Kierstad L.S., Rice C., Brusic V., Storkus W.J. (1998). DC facilitate the generation of tumor antigen-specific CD4+ T cells with diverse specificities. Journal of Leukocyte Biology F32, Suppl. 2. (Meeting abstract).
7 Brusic V., Wilkins J.S, Stanyon C.A., Zeleznikow J. (1998). Data learning: understanding biological data. In Merrill G., Pathak D.K. (eds.) Knowledge Sharing Across Biological and Medical Knowledge Based Systems: Papers from the 1998 AAAI Workshop pp. 12-19. AAAI Technical Report WS-98-04. AAAI Press.
6 Hon L., Abernethy N.F., Brusic V., Chai J., Altman R. (1998). MHCWeb: Converting a WWW database into a knowledge-based collaborative environment. Section on Medical Informatics Technical Report SMI-98-0724, StanfordUniversity.
5 Daniel S., Brusic V., Caillat-Zucman S., Petrovsky N., Harrison L., Riganelli D., F. Sinigaglia F., Gallazzi F., Hammer J., van Endert P.M. (1997). The relationship between peptide selectivity of HLA class I molecules and TAP transporters. Immunology Letters 56(1-3):240. (Meeting abstract).
4 Brusic V., Rudy G., Harrison L.C. (1997). Molecular mimicry – from hypothesis towards evidence. Immunology Today 18(2):95-96. (Letter)
3 Baum H., Brusic V., Choudhuri K., Cunningham P., Vergani D., Peakman M. (1995). MHC molecular mimicry in diabetes. Nature Medicine 1(5):388. (Letter).
2 Nakagawa K, Brusic V, McColl G, Harrison LC. Retrovirus expression in synovial tissue from patients with rheumatoid arthritis (RA). Arthritis and Rheumatism 38(9), 387-387. (Meeting abstract).
1 Rudy G., Brusic V., Harrison L.C., Lew A.M. (1995). Sequence similarity between the b-cell autoantigens, proinsulin and glutamic acid decarboxylase: a clue to pathogenesis? Immunology Today 16(8):406-407. (Letter).

 

Учешће на националним и међународним конференцијама

2010 Biomarker Discovery Conference @
  The Sixth International Conference on Advanced Data Mining and Applications (ADMA 2010). November 19-21, 2010, Chongqing, China. (Keynote Speaker)
  Immunoinformatics and Computational Immunology Workshop (ICIW 2010). August 2-4, 2010 Niagara Falls, NY, USA. (Keynote Speaker)
  Ninth International Conference on Bioinformatics (InCoB 2010), September 26-28, Tokyo, Japan (BCII Sessions Chair).
  PEGS 2010: the essential protein engineering summit. May 17-21, 2010, Boston, MA. “Computational Simulations of the Immune System: Applications for Vaccine Development” (Invited Speaker).
2009 IEEE Congress on Evolutionary Computation (IEEE CEC 2010). May 18-21, Trondheim, Norway (Member, Program Committee)
  Eighth International Conference on Bioinformatics (InCoB 2009), September 7-11, 2009, Singapore. (Member, Program Committee).
  2nd International Conference on Biomedical and Pharmaceutical Engineering 2006 (ICBPE 2006), Dec 2-4, 2009, Singapore. (Member, Program Committee).
2008 ICONIP 2008 – 15th International Conference on Neural Information Processing of the Asia – Pacific Neural Network Assembly, November 25-28, 2008, Auckland, New Zealand “Pattern Recognition in Vaccine Discovery“ (plenary speaker).
  7th International Conference in Bioinformatics (InCoB), Oct. 20-22, 2008, Taipei, Taiwan. “Translational Medicine: A Grand Challenge for Bioinformatics” (Keynote Speaker).
  2008 BMT Tandem Meetings, February 13-17, 2008, San Diego, California, USA. (Oral presentation; ASBMT best abstract award for basic science).
  2008 International Conference on Biomedical Engineering and Informatics (BMEI 2008), 27 to 30 May 27-30, 2008, Sanya, Hainan, China. (Member, Program Committee).
2007 2nd IAPR International Workshop on Pattern Recognition in Bioinformatics (PRIB 2007). Grand Plaza Park Hotel, Oct 1-2, 2007, Singapore. “Pattern Recognition and Computational Simulations in Immunology and Vaccine Discovery”. (Invited Speaker).
  Sixth International Conference on Bioinformatics (InCoB 2007), 27-30 August 2007, HKUST, Hong Kong, Hanoi, Vietnam and Nansha, PR China. (Member, Program Committee).
  2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, April 1-5, 2007, Honolulu, Hawaii. (Member, Program Committee).
  International Conference on Biomedical and Pharmaceutical Engineering 2006 (ICBPE 2006), Dec 11-14, 2006, Singapore. “Computational Immunology: Deciphering the Immune System“ (Plenary Speaker)
2006 International Congress of Immunogenomics and Immunomics (BCII 2006), Oct 8-12, 2006, Budapest, Hungary, (Congress Co-chair)
  Workshop on Pattern Recognition in Bioinformatics (PRIB 2006), August 20, 2006, Hong Kong. (Member, Program Committee)
  An interactive Seminar: Linking Science to Horticulture – the Future? The Australian Society of Horticultural Science, Brisbane, QLD, May 25, 2006. “Bioinformatics: Technological Opportunities for Horticulture” (Keynote Speaker)
  Domain Modelling & User Evaluation Workshop, “Bioinformatics – technological opportunities for horticulture”. Generation Challenge Programme Subprogramme 4, Pretoria, South Africa. March 28-31, 2006. “Bioinformatics for study of environmental stress in plants”. (Invited Speaker)
  1st International Conference on Advanced Medical Engineering and Informatics. Reconstruction and restoration of Biological Function from molecule to Body. June 2-3, 2006, Osaka, Japan. (Keynote speaker)
  PAKDD 2006, 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining, BioDM2006 Workshop, Apr 9-12, 2006, Singapore. (Workshop Member, Program Committee)
  The 20th IEEE International Conference on Advanced Information Networking and Applications (AINA 2006), April 18-20, 2006, ViennaUniversity of Technology, Vienna, Austria. (Member Program Committee).
2001-2005 16th International Conference on Genome Informatics, December 19-21, 2005, Yokohama, Japan. (Member, Program Committee)
  2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CiBCB 2005), Nov 14-15, 2005, San Diego, USA (Reviewer)
  4th World congress of Cellular and Molecular Biology, October 7-12, 2005, Poitiers, France (Member International Scientific Committee, Symposium Chair)
  6th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL’05), July 6-8, 2005, Brisbane, Queensland, Australia (Speaker).
  Seminars in Immunomics meeting, May 29-Jun 2 2005, Recife, Brazil (Invited Speaker and Session Chair)
  A-IMBN SCA Joint Bio Symposium, May 11, 2005, Hanoi, Vietnam (Invited Speaker)
  Myelin Structure and its Role in Autoimmunity (MARIE II), May 1-5, 2005 Potenza, Italy (Invited Speaker and International Observer to the Steering Committee)
  3rd Congres of the Federation of Immunological Societies of Asia-Oceania (FIMSA 2005), April 18-22, 2005, Hangzhou, China (Invited Speaker)
  2nd International Immunoinformatics Symposium, March 7-9, 2005, Boston, USA. (Member, Scientific Program Committee).
  3rd Asia-Pacific Bioinformatics Conference (APBC 2005), Jan 17-21, 2005 Singapore (Chair organizing committee)
  15th Workshop on Genome Informatics (GIW 2004), Dec 13-15, 2004 Yokohama, Japan. (Co-Chair Program Committee).
  1st International Conference on Basic and Clinical ImmunoGenomics. October 3-7, 2004, Budapest, Hungary (Invited speaker, session chair).
  2nd European Workshop on Data Mining and Text Mining for Bioinformatics. Sep 24, 2004, Pisa, Italy. (Member Program Committee)
  International Workshop on Knowledge Discovery in BioMedicine (KDbM-04). (PRICAI 2004 Workshop 6) Aug 9, 2004, Auckland, New Zealand. (Member Program Committee).
  12th International Conference on Intelligent Systems for Molecular Biology and 3rd European Conference on Computational Biology (ISMB ECCB 2004), July 31-August 4 2004, Glasgow, UK. (Member, Program Committee).
  COST 840 Applications of Immobilisation/Bioencapsulation in Medicine, Pharmacy, Food Technology and Biotechnology 25-27 June 2004, Belgrade, Serbia and Montenegro (Keynote Speaker)
  The workshop on Future Directions of Research in Promising Areas Around Immunology, hosted by Center for Research and Development Strategy of the Japan Science and Technology Agency, April 2-3, 2004, Tokyo, Japan. (Invited Speaker)
  Singapore Immunoinformatics Symposium From databases to vaccines, March 1st 2004, Institute for Infocomm Research, Singapore. (Organiser)
  1st International Immunoinformatics Symposium: Immunology Meets Bioinformatics, Feb 26-27, 2004, Yokohama, Japan. (Session Chair, Invited Speaker).
  9th International Conference on Database Systems for Advanced Applications   (DASFAA 2004). 24-27 February, 2004, Jeju Island, Korea. (Member Program Committee).
  14th Workshop on Genome Informatics, Dec 15-17, 2003 Yokohama, Japan. (Session Chair).
  The 1st Annual Symposium of Association of Asian Societies for Bioinformatics (AASBi). 14 December, 2003, Yokohama, Japan. (Invited Plenary Speaker “Immunoinformatics: Tools for Large-scale Immunology”)
  Biotechnology Havana 2003, Medical Applications of Biotechnology, November 23-28, 2003 Havana, Cuba. (Invited plenary speaker “Immunoinformatics: Deciphering the Immune System”)
  10th Asian Chemical Congress, October 21-23, Hanoi, Vietnam. (Keynote Speaker, Medicinal Chemistry and Natural Products Minisymposium “Prediction of scorpion toxin functional properties from primary sequence”).
  7th European Conference on Principles and Practice of Knowledge Discovery in Databases ECML/PKDD-2003, Workshop on Data Mining and Text Mining for Bioinformatics, September 22-26, Dubrovnik, Croatia. (Member Program Committee).
  11th International Conference on Intelligent Systems for Molecular Biology (ISMB-2003) Brisbane, Australia, June 29 – July 3, 2003. (Invited Tutorial “Biological Data Warehousing”).
  Colloque 2003, Les nouvelles technologies aux service de la Biologie et de la Santé (New technologies in the service of biology and health), 25-26 April 2003, Poitiers, France (Invited Plenary Speaker “Immunomics – the New Immunology”).
  8th International Conference on Database Systems for Advanced Applications   (DASFAA 2003). 26 – 28 March, 2003, Kyoto, Japan. (Member Program Committee).
  Joint Singapore-Canada workshop The Interface of Biology with Information Technology, March 17-18, 2003, Singapore (Member Organising Committee, Invited Plenary Speaker)
  2nd Conference on Interoperability of Biological Data, “BioWare -a Framework for Biological Data Warehousing” March 3, 2003, Mishima, Japan (Invited Plenary Speaker).
  2nd Asian Joint Workshop for Protein Informatics “Modelling Promiscuous HLA-peptide Interactions”. February 27-28, 2003, Osaka, Japan (Invited Plenary Speaker).
  13th Workshop on Genome Informatics, Dec 16-18, 2002 Tokyo, Japan. (Member Program Committee).
  FIMSA Advanced Course and Conference: Molecular Mechanisms of Infection and Immunity, Oct 21-25, 2002 Ayuttaya, Thailand. (Invited Tutorial “Bioinformatics for Immunology”).
  Immunoinformatics: Bioinformatics Strategies for Better Understanding of Immune Function. Novartis Foundation Symposium 254, Oct 8-10, 2002 London, UK. (Invited Plenary Speaker, Conference Co-convenor)
  6th NUS-NUH Annual Scientific Meeting. Aug 14, 2002, Singapore (Invited Plenary Speaker).
  Bioinformatics and Protein Interactions Workshop Jun 10-12, 2002, Singapore. (Conference Chair).
  Myelin Structure and its Role in Autoimmunity (MARIE). Jun 5-8, 2002, Potenza, Italy. (Invited Tutorial and Invited Plenary Speaker).
  Workshop on protein interaction and clinical data analysis May 27-31, 2002, Singapore. (Invited Plenary Speaker).
  FANTOM2 (Functional Annotation of Mouse Transcriptome) Cherry Blossom Meeting, Apr 29-May 4 2002, Yokohama, Japan. (Poster, Annotator).
  The S* Bioinformatics Education Symposium (BioED 2002), Mar 11, 2002, Singapore. (Invited Plenary Speaker).
  International Conference on Bioinformatics (InCoB 2002), Feb 5-8 2002 (pre-conference workshop), Bangkok, Thailand. (Invited Tutorial).
  12th Workshop on Genome Informatics, Dec 17-19, 2001 Tokyo, Japan. (Member Program Committee).
  31st Annual Scientific Meeting, Australasian Society of Immunology, Dec 2-6, 2001 Canberra, Australia. (Keynote Speaker).
  BioMedical 2001, Sep 19-21, 2001 Singapore. (Poster)
  World Chemistry Congress, Jul 1-6, 2001 Brisbane, Australia. (Oral Presentation).
1987-2000 11th Workshop on Genome Informatics, Dec 13-15, 2000, Tokyo, Japan. (Poster).
  8th International Conference on Intelligent Systems for Molecular Biology (ISMB-00), Aug 19-23 2000, San Diego, California, USA. (Poster).
  CBI Millenium Symposium. Chem-Bio Informatics Society. 26-28 July, 2000, Tokyo, Japan. (Poster).
  10th Workshop on Genome Informatics, Dec 13-15, 1999, Tokyo, Japan. (Poster).
  29th Annual Meeting of the Japanese Society of Immunology, Nov 30-Dec 3, 1999, Kyoto, Japan. (Poster and Oral Presentation).
  8th Asian Chemical Congress, Taipei, Taiwan, 21-24 November 1999 (Invited Plenary Speaker).
  6th International Conference on Neural Information Processing ICONIP’99, 16-20 November 1999, Perth, Australia, (Oral Presentation).
  BioInformatics 21. The 4th Annual Symposium on BioInformatics, BioInformatics Centre, National University of Singapore, 26-27 October, 1999. (Speaker).
  International Joint Conference on Neural Networks IJCNN’99. July 10-16, 1999, Washington, DC, USA. (Speaker and Poster).
  Symposium: Trends in Knowledge Discovery from Databases, Singapore, 29th June 1999. (Speaker, Program Committee Member).
  Mini Symposium: “BioInformatics in Aiding Experimental Research”, Singapore, 16 March, 1999. (Speaker, Chair Panel Discussion).
  American Medical Informatics Association Annual Symposium AMIA 1998, Buena Vista Palace, Walt Disney World Resort, Florida, USA, 7-11 November, 1998.
  3rd Australian Peptide Conference “From Discovery to Therapeutics”, Laguna Quays, The Whitsundays, Queensland, Australia, 4-9th October, 1998. (Invited Plenary Speaker).
  BioMedInfo Singapore ’98, Singapore, 29-30 September 1998. (Speaker).
  5th International Symposium on Dendritic Cells in Fundamental and Clinical Immunology, Pittsburgh, Pensylvania, 23-28th September 1998.. Journal of Leukocyte Biology F32, Suppl. 2.
  IXth International Congress of Parasitology ICOPA IX, Makuhari Chiba, Japan, August 24-28, 1998.
  15th National Conference on Artificial Intelligence AAAI-98, Madison, Wisconsin, USA, 26-31 July 1998. Workshop “Knowledge Sharing across Biological and Medical Knowledge Based Systems” (Invited Plenary Speaker).
  6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98) Montreal, Canada, June 28 – July 1 1998. (Invited Tutorial).
  46th Annual Meeting of The American Society of Tropical Medicine and Hygiene, Lake Buena Vista, Florida, USA, 7-11 December 1997.
  27th Annual Scientific Meeting of the Australasian Society for Immunology (ASI 97), Perth, Australia, 31 November – 7 December 1997.
  13th European Immunology Meeting, Amsterdam, 22-25 June 1997. (Poster).
  5th International Conference on Intelligent Systems for Molecular Biology (ISMB-97) Halkidiki, Greece, 21-25 June 1997. (Speaker).
  2nd Congress of the Immunology of Diabetes Society, Canberra, 8-11 December 1996.
  1st Congress of Federation of Immunological Societies of ASIA-Oceania (FIMSA), Adelaide, 1-5 December 1996.
  1st Electronic Molecular Modelling and Graphics Society Conference (MGMS EC 1). Internet conference. 7-18 October 1996.
  2nd CSIRO Symposium “Computational Challenges in Life Sciences”. Melbourne, Australia, 5-7 February 1996. (Speaker).
  25th Annual Scientific Meeting of the Australasian Society for Immunology (ASI 95), Gold Coast, Australia, 3-7 December 1995. (Speaker, Poster).
  4th International Workshop on the Molecular and Cell Biology of Autoantibodies and Autoimmunity, Melbourne, Australia. 15-18 November 1995. (Poster).
  1st Australian Conceptual Structures Workshop. University of New England, Armidale, New South Wales, Australia. 22 November 1994. (Speaker).
  2nd Australian Conference on Complex Systems (Complex94). University of CentralQueensland, Rockhampton, Queensland, Australia, 26-28 September 1994. (Speaker).
  2nd IFAC/IFIP Workshop on Experience with the Management of Software Projects. Sarajevo, Yugoslavia. 27-29 September 1988. (Speaker).
  The East and West Combined Orthopaedic Meeting. Belgrade, Yugoslavia. 11-16 September 1988. (Speaker).
  XXIIth Yugoslav Conference of ETAN, Sarajevo, Yugoslavia, 1988.
  2nd International Symposium “Automaton and Robot”, Belgrade, Yugoslavia. 27-29 October 1987. (Speaker).